| 1 | Tue 20 Aug 2013 | 1-2 v Dover AthleticDover Athletic 2-1 Ebbsfleet United | Skrill South |
| 2 | Sat 24 Aug 2013 | 1-1 v Eastbourne BoroughEastbourne Borough 1-1 Ebbsfleet United | Skrill South |
| 3 | Mon 26 Aug 2013 | 1-1 v Maidenhead UnitedEbbsfleet United 1-1 Maidenhead United | Skrill South |
| 4 | Sat 31 Aug 2013 | 3-1 v Dorchester TownDorchester Town 1-3 Ebbsfleet United | Skrill South |
| 5 | Sat 7 Sep 2013 | 1-1 v Bath CityEbbsfleet United 1-1 Bath City | Skrill South |
| 6 | Sat 14 Sep 2013 | 2-2 v Basingstoke TownBasingstoke Town 2-2 Ebbsfleet United | Skrill South |
| 7 | Tue 17 Sep 2013 | 0-2 v Chelmsford CityEbbsfleet United 0-2 Chelmsford City | Skrill South |
| 8 | Sat 21 Sep 2013 | 0-0 v Boreham WoodEbbsfleet United 0-0 Boreham Wood | Skrill South |
| 9 | Sat 5 Oct 2013 | 6-0 v Weston-super-MareWeston-super-Mare 0-6 Ebbsfleet United | Skrill South |
| 10 | Tue 8 Oct 2013 | 3-1 v EastleighEbbsfleet United 3-1 Eastleigh | Skrill South |
| 11 | Sat 19 Oct 2013 | 2-1 v Gosport BoroughEbbsfleet United 2-1 Gosport Borough | Skrill South |
| 12 | Tue 22 Oct 2013 | 2-3 v Bishop's StortfordBishop's Stortford 3-2 Ebbsfleet United | Skrill South |
| 13 | Sat 2 Nov 2013 | 4-0 v Concord RangersEbbsfleet United 4-0 Concord Rangers | Skrill South |
| 14 | Sat 23 Nov 2013 | 1-0 v Basingstoke TownEbbsfleet United 1-0 Basingstoke Town | Skrill South |
| 15 | Tue 26 Nov 2013 | 2-1 v Hayes & Yeading UnitedHayes & Yeading United 1-2 Ebbsfleet United | Skrill South |
| 16 | Sat 7 Dec 2013 | 3-1 v WhitehawkEbbsfleet United 3-1 Whitehawk | Skrill South |
| 17 | Thu 26 Dec 2013 | 0-0 v BromleyBromley 0-0 Ebbsfleet United | Skrill South |
| 18 | Wed 1 Jan 2014 | 1-3 v BromleyEbbsfleet United 1-3 Bromley | Skrill South |
| 19 | Tue 14 Jan 2014 | 1-0 v FarnboroughFarnborough 0-1 Ebbsfleet United | Skrill South |
| 20 | Sat 18 Jan 2014 | 2-1 v Bishop's StortfordEbbsfleet United 2-1 Bishop's Stortford | Skrill South |
| 21 | Sat 25 Jan 2014 | 1-3 v EastleighEastleigh 3-1 Ebbsfleet United | Skrill South |
| 22 | Sat 1 Feb 2014 | 1-1 v Weston-super-MareEbbsfleet United 1-1 Weston-super-Mare | Skrill South |
| 23 | Mon 3 Feb 2014 | 42-1 v Chelmsford CityChelmsford City 1-2 Ebbsfleet United | Skrill South |
| 24 | Sat 15 Feb 2014 | 3-0 v Staines TownEbbsfleet United 3-0 Staines Town | Skrill South |
| 25 | Sat 1 Mar 2014 | 3-0 v FarnboroughEbbsfleet United 3-0 Farnborough | Skrill South |
| 26 | Tue 4 Mar 2014 | 2-2 v Bath CityBath City 2-2 Ebbsfleet United | Skrill South |
| 27 | Sat 8 Mar 2014 | 1-0 v Hayes & Yeading UnitedEbbsfleet United 1-0 Hayes & Yeading United | Skrill South |
| 28 | Tue 11 Mar 2014 | 2-0 v Tonbridge AngelsTonbridge Angels 0-2 Ebbsfleet United | Skrill South |
| 29 | Sat 15 Mar 2014 | 1-1 v WhitehawkWhitehawk 1-1 Ebbsfleet United | Skrill South |
| 30 | Mon 17 Mar 2014 | 0-1 v Havant & WaterloovilleHavant & Waterlooville 1-0 Ebbsfleet United | Skrill South |
| 31 | Sat 22 Mar 2014 | 1-2 v Boreham WoodBoreham Wood 2-1 Ebbsfleet United | Skrill South |
| 32 | Thu 27 Mar 2014 | 2-0 v Gosport BoroughGosport Borough 0-2 Ebbsfleet United | Skrill South |
| 33 | Sat 29 Mar 2014 | 1-0 v Tonbridge AngelsEbbsfleet United 1-0 Tonbridge Angels | Skrill South |
| 34 | Sat 5 Apr 2014 | 1-1 v Staines TownStaines Town 1-1 Ebbsfleet United | Skrill South |
| 35 | Sat 12 Apr 2014 | 1-3 v Sutton UnitedSutton United 3-1 Ebbsfleet United | Skrill South |
| 36 | Fri 18 Apr 2014 | 1-0 v Eastbourne BoroughEbbsfleet United 1-0 Eastbourne Borough | Skrill South |
| 37 | Mon 21 Apr 2014 | 0-1 v Maidenhead UnitedMaidenhead United 1-0 Ebbsfleet United | Skrill South |
| 38 | Thu 24 Apr 2014 | 42-1 v Concord RangersConcord Rangers 1-2 Ebbsfleet United | Skrill South |
| 39 | Sat 26 Apr 2014 | 44-0 v Dorchester TownEbbsfleet United 4-0 Dorchester Town | Skrill South |
| 40 | Wed 30 Apr 2014 | 44-0 v BromleyEbbsfleet United 4-0 Bromley | Skrill South Play-off Semi Final |
| 41 | Sat 3 May 2014 | 40-1 v BromleyBromley 1-0 Ebbsfleet United | Skrill South Play-off Semi Final |
| 42 | Sat 10 May 2014 | 40-1 v Dover AthleticEbbsfleet United 0-1 Dover Athletic | Skrill South Play-off Final |
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