| 1 | Sat 11 Aug 2012 | 105-4 v Nuneaton TownNuneaton Town 4-5 Ebbsfleet United | Blue Square Bet Premier |
| 2 | Tue 14 Aug 2012 | 100-1 v Braintree TownEbbsfleet United 0-1 Braintree Town | Blue Square Bet Premier |
| 3 | Sat 18 Aug 2012 | 101-1 v WrexhamEbbsfleet United 1-1 Wrexham | Blue Square Bet Premier |
| 4 | Sat 25 Aug 2012 | 102-4 v Hereford UnitedHereford United 4-2 Ebbsfleet United | Blue Square Bet Premier |
| 5 | Mon 27 Aug 2012 | 101-3 v Luton TownEbbsfleet United 1-3 Luton Town | Blue Square Bet Premier |
| 6 | Sat 1 Sep 2012 | 101-1 v Lincoln CityLincoln City 1-1 Ebbsfleet United | Blue Square Bet Premier |
| 7 | Tue 4 Sep 2012 | 101-4 v Forest Green RoversForest Green Rovers 4-1 Ebbsfleet United | Blue Square Bet Premier |
| 8 | Sat 15 Sep 2012 | 100-1 v SouthportSouthport 1-0 Ebbsfleet United | Blue Square Bet Premier |
| 9 | Sat 22 Sep 2012 | 102-4 v BarrowEbbsfleet United 2-4 Barrow | Blue Square Bet Premier |
| 10 | Tue 25 Sep 2012 | 102-2 v WokingEbbsfleet United 2-2 Woking | Blue Square Bet Premier |
| 11 | Sat 29 Sep 2012 | 101-3 v Stockport CountyStockport County 3-1 Ebbsfleet United | Blue Square Bet Premier |
| 12 | Sat 6 Oct 2012 | 101-1 v Kidderminster HarriersEbbsfleet United 1-1 Kidderminster Harriers | Blue Square Bet Premier |
| 13 | Sat 27 Oct 2012 | 101-0 v TamworthTamworth 0-1 Ebbsfleet United | Blue Square Bet Premier |
| 14 | Sat 3 Nov 2012 | 102-4 v Carlisle UnitedCarlisle United 4-2 Ebbsfleet United | FA Cup with Budweiser First Round |
| 15 | Tue 6 Nov 2012 | 102-2 v AFC Telford UnitedAFC Telford United 2-2 Ebbsfleet United | Blue Square Bet Premier |
| 16 | Sat 1 Dec 2012 | 101-1 v Grimsby TownEbbsfleet United 1-1 Grimsby Town | Blue Square Bet Premier |
| 17 | Sat 8 Dec 2012 | 101-4 v Mansfield TownMansfield Town 4-1 Ebbsfleet United | Blue Square Bet Premier |
| 18 | Wed 3 Apr 2013 | 101-1 v BarrowBarrow 1-1 Ebbsfleet United | Blue Square Bet Premier |
| 19 | Sat 6 Apr 2013 | 101-1 v Nuneaton TownEbbsfleet United 1-1 Nuneaton Town | Blue Square Bet Premier |
| 20 | Tue 9 Apr 2013 | 100-1 v HydeHyde 1-0 Ebbsfleet United | Blue Square Bet Premier |
| 21 | Sat 13 Apr 2013 | 101-3 v AFC Telford UnitedEbbsfleet United 1-3 AFC Telford United | Blue Square Bet Premier |
| 22 | Thu 18 Apr 2013 | 100-2 v Luton TownLuton Town 2-0 Ebbsfleet United | Blue Square Bet Premier |
| 23 | Sat 20 Apr 2013 | 100-2 v GatesheadGateshead 2-0 Ebbsfleet United | Blue Square Bet Premier |
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