| 1 | Tue 30 Oct 2012 | 2-2 v Basingstoke TownBasingstoke Town 2-2 Eastbourne Borough | Blue Square Bet South |
| 2 | Sat 3 Nov 2012 | 0-3 v Dover AthleticEastbourne Borough 0-3 Dover Athletic | Blue Square Bet South |
| 3 | Sat 17 Nov 2012 | 1-0 v Truro CityEastbourne Borough 1-0 Truro City | Blue Square Bet South |
| 4 | Sat 1 Dec 2012 | 2-2 v Bath CityBath City 2-2 Eastbourne Borough | Blue Square Bet South |
| 5 | Sat 8 Dec 2012 | 2-1 v Maidenhead UnitedMaidenhead United 1-2 Eastbourne Borough | Blue Square Bet South |
| 6 | Sat 15 Dec 2012 | 1-2 v Salisbury CityEastbourne Borough 1-2 Salisbury City | Blue Square Bet South |
| 7 | Wed 26 Dec 2012 | 0-1 v Havant & WaterloovilleEastbourne Borough 0-1 Havant & Waterlooville | Blue Square Bet South |
| 8 | Tue 1 Jan 2013 | 3-2 v Havant & WaterloovilleHavant & Waterlooville 2-3 Eastbourne Borough | Blue Square Bet South |
| 9 | Sat 5 Jan 2013 | 1-2 v Boreham WoodBoreham Wood 2-1 Eastbourne Borough | Blue Square Bet South |
| 10 | Sat 26 Jan 2013 | 2-0 v Staines TownStaines Town 0-2 Eastbourne Borough | Blue Square Bet South |
| 11 | Sat 2 Feb 2013 | 1-1 v AFC HornchurchEastbourne Borough 1-1 AFC Hornchurch | Blue Square Bet South |
| 12 | Sat 9 Feb 2013 | 0-2 v Weston-super-MareEastbourne Borough 0-2 Weston-super-Mare | Blue Square Bet South |
| 13 | Sat 16 Feb 2013 | 0-2 v Sutton UnitedSutton United 2-0 Eastbourne Borough | Blue Square Bet South |
| 14 | Sat 23 Feb 2013 | 1-0 v FarnboroughFarnborough 0-1 Eastbourne Borough | Blue Square Bet South |
| 15 | Sat 2 Mar 2013 | 0-1 v EastleighEastleigh 1-0 Eastbourne Borough | Blue Square Bet South |
| 16 | Tue 5 Mar 2013 | 0-0 v Dorchester TownEastbourne Borough 0-0 Dorchester Town | Blue Square Bet South |
| 17 | Sat 9 Mar 2013 | 0-1 v FarnboroughEastbourne Borough 0-1 Farnborough | Blue Square Bet South |
| 18 | Tue 19 Mar 2013 | 2-1 v Hayes & Yeading UnitedEastbourne Borough 2-1 Hayes & Yeading United | Blue Square Bet South |
| 19 | Mon 25 Mar 2013 | 0-1 v Chelmsford CityChelmsford City 1-0 Eastbourne Borough | Blue Square Bet South |
| 20 | Sat 30 Mar 2013 | 2-0 v BromleyBromley 0-2 Eastbourne Borough | Blue Square Bet South |
| 21 | Mon 1 Apr 2013 | 0-3 v Welling UnitedEastbourne Borough 0-3 Welling United | Blue Square Bet South |
| 22 | Sat 6 Apr 2013 | 2-2 v Truro CityTruro City 2-2 Eastbourne Borough | Blue Square Bet South |
| 23 | Tue 9 Apr 2013 | 2-1 v Billericay TownBillericay Town 1-2 Eastbourne Borough | Blue Square Bet South |
| 24 | Sat 13 Apr 2013 | 1-2 v Chelmsford CityEastbourne Borough 1-2 Chelmsford City | Blue Square Bet South |
| 25 | Tue 16 Apr 2013 | 1-1 v Boreham WoodEastbourne Borough 1-1 Boreham Wood | Blue Square Bet South |
| 26 | Tue 23 Apr 2013 | 1-1 v Tonbridge AngelsTonbridge Angels 1-1 Eastbourne Borough | Blue Square Bet South |
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