| 1 | Sat 6 Aug 2016 | 0-0 v WrexhamWrexham 0-0 Dover Athletic | National League |
| 2 | Tue 9 Aug 2016 | 1-4 v Boreham WoodDover Athletic 1-4 Boreham Wood | National League |
| 3 | Sat 13 Aug 2016 | 82-0 v North Ferriby UnitedDover Athletic 2-0 North Ferriby United | National League |
| 4 | Tue 16 Aug 2016 | 84-2 v EastleighEastleigh 2-4 Dover Athletic | National League |
| 5 | Sat 20 Aug 2016 | 83-1 v BarrowDover Athletic 3-1 Barrow | National League |
| 6 | Sat 27 Aug 2016 | 81-2 v Torquay UnitedTorquay United 2-1 Dover Athletic | National League |
| 7 | Mon 29 Aug 2016 | 81-2 v Aldershot TownDover Athletic 1-2 Aldershot Town | National League |
| 8 | Sat 3 Sep 2016 | 81-0 v SouthportSouthport 0-1 Dover Athletic | National League |
| 9 | Sat 10 Sep 2016 | 84-3 v Forest Green RoversDover Athletic 4-3 Forest Green Rovers | National League |
| 10 | Tue 13 Sep 2016 | 80-2 v Dagenham & RedbridgeDagenham & Redbridge 2-0 Dover Athletic | National League |
| 11 | Sat 17 Sep 2016 | 81-0 v York CityYork City 0-1 Dover Athletic | National League |
| 12 | Sat 24 Sep 2016 | 82-0 v Lincoln CityDover Athletic 2-0 Lincoln City | National League |
| 13 | Sat 1 Oct 2016 | 80-5 v ChesterChester 5-0 Dover Athletic | National League |
| 14 | Tue 4 Oct 2016 | 83-1 v Sutton UnitedDover Athletic 3-1 Sutton United | National League |
| 15 | Sat 8 Oct 2016 | 82-4 v GatesheadGateshead 4-2 Dover Athletic | National League |
| 16 | Sat 22 Oct 2016 | 86-1 v Braintree TownDover Athletic 6-1 Braintree Town | National League |
| 17 | Tue 25 Oct 2016 | 82-0 v BromleyBromley 0-2 Dover Athletic | National League |
| 18 | Sat 29 Oct 2016 | 81-4 v Tranmere RoversDover Athletic 1-4 Tranmere Rovers | National League |
| 19 | Sat 5 Nov 2016 | 81-1 v Cambridge UnitedCambridge United 1-1 Dover Athletic | Emirates FA Cup First Round |
| 20 | Sat 12 Nov 2016 | 83-2 v Solihull MoorsSolihull Moors 2-3 Dover Athletic | National League |
| 21 | Thu 17 Nov 2016 | 82-4 v Cambridge UnitedDover Athletic 2-4 Cambridge United | Emirates FA Cup First Round |
| 22 | Sat 19 Nov 2016 | 82-0 v GuiseleyDover Athletic 2-0 Guiseley | National League |
| 23 | Tue 22 Nov 2016 | 83-1 v WokingDover Athletic 3-1 Woking | National League |
| 24 | Tue 29 Nov 2016 | 86-0 v Sutton UnitedSutton United 0-6 Dover Athletic | National League |
| 25 | Sat 3 Dec 2016 | 81-2 v Dagenham & RedbridgeDover Athletic 1-2 Dagenham & Redbridge | National League |
| 26 | Sat 10 Dec 2016 | 81-1 v DartfordDartford 1-1 Dover Athletic | FA Trophy First Round |
| 27 | Tue 13 Dec 2016 | 81-2 v DartfordDover Athletic 1-2 Dartford | FA Trophy First Round |
| 28 | Mon 26 Dec 2016 | 81-1 v Maidstone UnitedDover Athletic 1-1 Maidstone United | National League |
| 29 | Sun 1 Jan 2017 | 84-1 v Maidstone UnitedMaidstone United 1-4 Dover Athletic | National League |
| 30 | Sat 7 Jan 2017 | 212-2 v York CityDover Athletic 2-2 York City | National League |
| 31 | Tue 25 Apr 2017 | 112-2 v Macclesfield TownDover Athletic 2-2 Macclesfield Town | National League |
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