| 1 | Sat 29 Sep 2012 | 2-0 v Maidenhead UnitedDover Athletic 2-0 Maidenhead United | Blue Square Bet South |
| 2 | Sat 27 Oct 2012 | 1-0 v Basingstoke TownBasingstoke Town 0-1 Dover Athletic | Blue Square Bet South |
| 3 | Sat 3 Nov 2012 | 3-0 v Eastbourne BoroughEastbourne Borough 0-3 Dover Athletic | Blue Square Bet South |
| 4 | Sat 17 Nov 2012 | 0-1 v Boreham WoodDover Athletic 0-1 Boreham Wood | Blue Square Bet South |
| 5 | Sat 24 Nov 2012 | 3-1 v Weston-super-MareDover Athletic 3-1 Weston-super-Mare | Blue Square Bet South |
| 6 | Sat 1 Dec 2012 | 2-1 v Billericay TownBillericay Town 1-2 Dover Athletic | Blue Square Bet South |
| 7 | Tue 4 Dec 2012 | 3-0 v Truro CityTruro City 0-3 Dover Athletic | Blue Square Bet South |
| 8 | Sat 8 Dec 2012 | 2-0 v EastleighDover Athletic 2-0 Eastleigh | Blue Square Bet South |
| 9 | Sun 16 Dec 2012 | 4-2 v Hayes & Yeading UnitedHayes & Yeading United 2-4 Dover Athletic | Blue Square Bet South |
| 10 | Wed 26 Dec 2012 | 1-2 v Tonbridge AngelsTonbridge Angels 2-1 Dover Athletic | Blue Square Bet South |
| 11 | Tue 1 Jan 2013 | 0-1 v Tonbridge AngelsDover Athletic 0-1 Tonbridge Angels | Blue Square Bet South |
| 12 | Sat 5 Jan 2013 | 0-1 v Staines TownDover Athletic 0-1 Staines Town | Blue Square Bet South |
| 13 | Sat 2 Feb 2013 | 3-2 v Truro CityDover Athletic 3-2 Truro City | Blue Square Bet South |
| 14 | Tue 19 Mar 2013 | 1-0 v BromleyDover Athletic 1-0 Bromley | Blue Square Bet South |
| 15 | Tue 26 Mar 2013 | 1-0 v AFC HornchurchDover Athletic 1-0 AFC Hornchurch | Blue Square Bet South |
| 16 | Sat 30 Mar 2013 | 1-1 v Sutton UnitedDover Athletic 1-1 Sutton United | Blue Square Bet South |
| 17 | Sat 27 Apr 2013 | 4-0 v BromleyBromley 0-4 Dover Athletic | Blue Square Bet South |
| 18 | Sat 4 May 2013 | 0-2 v EastleighDover Athletic 0-2 Eastleigh | Blue Square Bet South Play-off Semi Final |
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