| 1 | Sat 18 Aug 2012 | 2-2 v FarnboroughDover Athletic 2-2 Farnborough | Blue Square Bet South |
| 2 | Tue 21 Aug 2012 | 2-2 v Sutton UnitedSutton United 2-2 Dover Athletic | Blue Square Bet South |
| 3 | Sat 25 Aug 2012 | 1-0 v AFC HornchurchAFC Hornchurch 0-1 Dover Athletic | Blue Square Bet South |
| 4 | Mon 27 Aug 2012 | 0-0 v Eastbourne BoroughDover Athletic 0-0 Eastbourne Borough | Blue Square Bet South |
| 5 | Sat 1 Sep 2012 | 3-1 v EastleighEastleigh 1-3 Dover Athletic | Blue Square Bet South |
| 6 | Tue 4 Sep 2012 | 0-1 v Chelmsford CityDover Athletic 0-1 Chelmsford City | Blue Square Bet South |
| 7 | Sat 8 Sep 2012 | 0-1 v Hayes & Yeading UnitedDover Athletic 0-1 Hayes & Yeading United | Blue Square Bet South |
| 8 | Sat 15 Sep 2012 | 2-1 v Bath CityBath City 1-2 Dover Athletic | Blue Square Bet South |
| 9 | Sat 29 Sep 2012 | 2-0 v Maidenhead UnitedDover Athletic 2-0 Maidenhead United | Blue Square Bet South |
| 10 | Tue 2 Oct 2012 | 1-1 v Welling UnitedWelling United 1-1 Dover Athletic | Blue Square Bet South |
| 11 | Sat 20 Oct 2012 | 1-3 v Salisbury CityDover Athletic 1-3 Salisbury City | Blue Square Bet South |
| 12 | Sat 27 Oct 2012 | 1-0 v Basingstoke TownBasingstoke Town 0-1 Dover Athletic | Blue Square Bet South |
| 13 | Sat 17 Nov 2012 | 0-1 v Boreham WoodDover Athletic 0-1 Boreham Wood | Blue Square Bet South |
| 14 | Sat 24 Nov 2012 | 3-1 v Weston-super-MareDover Athletic 3-1 Weston-super-Mare | Blue Square Bet South |
| 15 | Sat 1 Dec 2012 | 2-1 v Billericay TownBillericay Town 1-2 Dover Athletic | Blue Square Bet South |
| 16 | Tue 4 Dec 2012 | 3-0 v Truro CityTruro City 0-3 Dover Athletic | Blue Square Bet South |
| 17 | Sat 8 Dec 2012 | 2-0 v EastleighDover Athletic 2-0 Eastleigh | Blue Square Bet South |
| 18 | Sun 16 Dec 2012 | 4-2 v Hayes & Yeading UnitedHayes & Yeading United 2-4 Dover Athletic | Blue Square Bet South |
| 19 | Wed 26 Dec 2012 | 1-2 v Tonbridge AngelsTonbridge Angels 2-1 Dover Athletic | Blue Square Bet South |
| 20 | Tue 1 Jan 2013 | 0-1 v Tonbridge AngelsDover Athletic 0-1 Tonbridge Angels | Blue Square Bet South |
| 21 | Tue 5 Mar 2013 | 2-1 v Maidenhead UnitedMaidenhead United 1-2 Dover Athletic | Blue Square Bet South |
| 22 | Sat 9 Mar 2013 | 2-2 v Havant & WaterloovilleDover Athletic 2-2 Havant & Waterlooville | Blue Square Bet South |
| 23 | Tue 19 Mar 2013 | 1-0 v BromleyDover Athletic 1-0 Bromley | Blue Square Bet South |
| 24 | Tue 26 Mar 2013 | 1-0 v AFC HornchurchDover Athletic 1-0 AFC Hornchurch | Blue Square Bet South |
| 25 | Mon 1 Apr 2013 | 3-0 v Chelmsford CityChelmsford City 0-3 Dover Athletic | Blue Square Bet South |
| 26 | Tue 9 Apr 2013 | 1-1 v Salisbury CitySalisbury City 1-1 Dover Athletic | Blue Square Bet South |
| 27 | Tue 16 Apr 2013 | 1-1 v Havant & WaterloovilleHavant & Waterlooville 1-1 Dover Athletic | Blue Square Bet South |
| 28 | Tue 23 Apr 2013 | 2-0 v Staines TownStaines Town 0-2 Dover Athletic | Blue Square Bet South |
| 29 | Sat 4 May 2013 | 0-2 v EastleighDover Athletic 0-2 Eastleigh | Blue Square Bet South Play-off Semi Final |
| 30 | Sun 12 May 2013 | 2-3 v Salisbury CitySalisbury City 3-2 Dover Athletic | Blue Square Bet South Play-off Final |
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