| 1 | Sat 6 Aug 2016 | 160-1 v Elgin CityCowdenbeath 0-1 Elgin City | Ladbrokes League Two |
| 2 | Sat 13 Aug 2016 | 163-4 v Forfar AthleticForfar Athletic 4-3 Cowdenbeath | Ladbrokes League Two |
| 3 | Sat 20 Aug 2016 | 162-0 v Edinburgh CityCowdenbeath 2-0 Edinburgh City | Ladbrokes League Two |
| 4 | Sat 27 Aug 2016 | 163-5 v ClydeClyde 5-3 Cowdenbeath | Ladbrokes League Two |
| 5 | Sat 15 Oct 2016 | 162-2 v Annan AthleticCowdenbeath 2-2 Annan Athletic | Ladbrokes League Two |
| 6 | Sat 10 Dec 2016 | 150-2 v Annan AthleticAnnan Athletic 2-0 Cowdenbeath | Ladbrokes League Two |
| 7 | Sat 17 Dec 2016 | 163-4 v Forfar AthleticCowdenbeath 3-4 Forfar Athletic | Ladbrokes League Two |
| 8 | Sat 24 Dec 2016 | 160-2 v ArbroathCowdenbeath 0-2 Arbroath | Ladbrokes League Two |
| 9 | Sat 31 Dec 2016 | 162-1 v Stirling AlbionStirling Albion 1-2 Cowdenbeath | Ladbrokes League Two |
| 10 | Sat 18 Feb 2017 | 160-1 v Annan AthleticCowdenbeath 0-1 Annan Athletic | Ladbrokes League Two |
| 11 | Tue 28 Feb 2017 | 161-2 v Edinburgh CityCowdenbeath 1-2 Edinburgh City | Ladbrokes League Two |
| 12 | Sat 11 Mar 2017 | 163-1 v Berwick RangersBerwick Rangers 1-3 Cowdenbeath | Ladbrokes League Two |
| 13 | Sat 25 Mar 2017 | 160-1 v Annan AthleticAnnan Athletic 1-0 Cowdenbeath | Ladbrokes League Two |
| 14 | Sat 1 Apr 2017 | 161-0 v ClydeCowdenbeath 1-0 Clyde | Ladbrokes League Two |
| 15 | Sat 8 Apr 2017 | 161-1 v Edinburgh CityEdinburgh City 1-1 Cowdenbeath | Ladbrokes League Two |
| 16 | Sat 15 Apr 2017 | 163-0 v Stirling AlbionStirling Albion 0-3 Cowdenbeath | Ladbrokes League Two |
| 17 | Sat 22 Apr 2017 | 161-2 v ArbroathCowdenbeath 1-2 Arbroath | Ladbrokes League Two |
| 18 | Sat 29 Apr 2017 | 161-1 v Forfar AthleticCowdenbeath 1-1 Forfar Athletic | Ladbrokes League Two |
| 19 | Sat 6 May 2017 | 160-0 v Elgin CityElgin City 0-0 Cowdenbeath | Ladbrokes League Two |
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