| 1 | Sat 4 Feb 2017 | 1-1 v BlackpoolBlackpool 1-1 Colchester United | Sky Bet League Two |
| 2 | Tue 21 Feb 2017 | 231-0 v Wycombe WanderersColchester United 1-0 Wycombe Wanderers | Sky Bet League Two |
| 3 | Sat 25 Feb 2017 | 232-1 v Hartlepool UnitedColchester United 2-1 Hartlepool United | Sky Bet League Two |
| 4 | Tue 28 Feb 2017 | 230-1 v Grimsby TownGrimsby Town 1-0 Colchester United | Sky Bet League Two |
| 5 | Sat 4 Mar 2017 | 231-1 v Cambridge UnitedCambridge United 1-1 Colchester United | Sky Bet League Two |
| 6 | Sat 11 Mar 2017 | 230-4 v PortsmouthColchester United 0-4 Portsmouth | Sky Bet League Two |
| 7 | Tue 14 Mar 2017 | 232-0 v Mansfield TownColchester United 2-0 Mansfield Town | Sky Bet League Two |
| 8 | Sat 18 Mar 2017 | 230-2 v Crewe AlexandraCrewe Alexandra 2-0 Colchester United | Sky Bet League Two |
| 9 | Sat 25 Mar 2017 | 232-1 v Luton TownColchester United 2-1 Luton Town | Sky Bet League Two |
| 10 | Sat 1 Apr 2017 | 231-3 v Notts CountyNotts County 3-1 Colchester United | Sky Bet League Two |
| 11 | Sat 8 Apr 2017 | 234-0 v StevenageColchester United 4-0 Stevenage | Sky Bet League Two |
| 12 | Fri 14 Apr 2017 | 231-1 v Doncaster RoversColchester United 1-1 Doncaster Rovers | Sky Bet League Two |
| 13 | Mon 17 Apr 2017 | 231-1 v MorecambeMorecambe 1-1 Colchester United | Sky Bet League Two |
| 14 | Sat 22 Apr 2017 | 230-0 v Plymouth ArgyleColchester United 0-0 Plymouth Argyle | Sky Bet League Two |
| 15 | Sat 29 Apr 2017 | 233-1 v Leyton OrientLeyton Orient 1-3 Colchester United | Sky Bet League Two |
| 16 | Sat 6 May 2017 | 42-0 v Yeovil TownColchester United 2-0 Yeovil Town | Sky Bet League Two |
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