| 1 | Sat 4 Feb 2017 | 31-1 v BlackpoolBlackpool 1-1 Colchester United | Sky Bet League Two |
| 2 | Sat 11 Feb 2017 | 32-1 v BarnetColchester United 2-1 Barnet | Sky Bet League Two |
| 3 | Tue 14 Feb 2017 | 32-3 v Crawley TownColchester United 2-3 Crawley Town | Sky Bet League Two |
| 4 | Tue 21 Feb 2017 | 31-0 v Wycombe WanderersColchester United 1-0 Wycombe Wanderers | Sky Bet League Two |
| 5 | Sat 25 Feb 2017 | 32-1 v Hartlepool UnitedColchester United 2-1 Hartlepool United | Sky Bet League Two |
| 6 | Tue 28 Feb 2017 | 30-1 v Grimsby TownGrimsby Town 1-0 Colchester United | Sky Bet League Two |
| 7 | Sat 4 Mar 2017 | 31-1 v Cambridge UnitedCambridge United 1-1 Colchester United | Sky Bet League Two |
| 8 | Sat 11 Mar 2017 | 30-4 v PortsmouthColchester United 0-4 Portsmouth | Sky Bet League Two |
| 9 | Tue 14 Mar 2017 | 32-0 v Mansfield TownColchester United 2-0 Mansfield Town | Sky Bet League Two |
| 10 | Sat 18 Mar 2017 | 30-2 v Crewe AlexandraCrewe Alexandra 2-0 Colchester United | Sky Bet League Two |
| 11 | Sat 1 Apr 2017 | 31-3 v Notts CountyNotts County 3-1 Colchester United | Sky Bet League Two |
| 12 | Fri 14 Apr 2017 | 31-1 v Doncaster RoversColchester United 1-1 Doncaster Rovers | Sky Bet League Two |
| 13 | Sat 29 Apr 2017 | 33-1 v Leyton OrientLeyton Orient 1-3 Colchester United | Sky Bet League Two |
| 14 | Sat 6 May 2017 | 32-0 v Yeovil TownColchester United 2-0 Yeovil Town | Sky Bet League Two |
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