| 1 | Tue 9 Aug 2016 | 60-4 v Brighton & Hove AlbionBrighton & Hove Albion 4-0 Colchester United | EFL Cup First Round |
| 2 | Tue 22 Nov 2016 | 63-0 v Cheltenham TownCheltenham Town 0-3 Colchester United | Sky Bet League Two |
| 3 | Sat 26 Nov 2016 | 64-0 v Crewe AlexandraColchester United 4-0 Crewe Alexandra | Sky Bet League Two |
| 4 | Sat 10 Dec 2016 | 60-0 v Mansfield TownMansfield Town 0-0 Colchester United | Sky Bet League Two |
| 5 | Sat 17 Dec 2016 | 62-1 v Notts CountyColchester United 2-1 Notts County | Sky Bet League Two |
| 6 | Mon 26 Dec 2016 | 61-0 v Luton TownLuton Town 0-1 Colchester United | Sky Bet League Two |
| 7 | Sat 31 Dec 2016 | 64-2 v StevenageStevenage 2-4 Colchester United | Sky Bet League Two |
| 8 | Mon 2 Jan 2017 | 62-0 v Cheltenham TownColchester United 2-0 Cheltenham Town | Sky Bet League Two |
| 9 | Sat 7 Jan 2017 | 64-1 v Carlisle UnitedColchester United 4-1 Carlisle United | Sky Bet League Two |
| 10 | Sat 14 Jan 2017 | 61-1 v Newport CountyNewport County 1-1 Colchester United | Sky Bet League Two |
| 11 | Sat 21 Jan 2017 | 60-3 v Exeter CityExeter City 3-0 Colchester United | Sky Bet League Two |
| 12 | Sat 4 Feb 2017 | 61-1 v BlackpoolBlackpool 1-1 Colchester United | Sky Bet League Two |
| 13 | Sat 11 Feb 2017 | 62-1 v BarnetColchester United 2-1 Barnet | Sky Bet League Two |
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