| 1 | Sat 29 Sep 2012 | 333-1 v Hartlepool UnitedColchester United 3-1 Hartlepool United | npower League One |
| 2 | Tue 2 Oct 2012 | 331-0 v Swindon TownSwindon Town 0-1 Colchester United | npower League One |
| 3 | Sat 6 Oct 2012 | 331-3 v Yeovil TownYeovil Town 3-1 Colchester United | npower League One |
| 4 | Sat 13 Oct 2012 | 331-0 v StevenageColchester United 1-0 Stevenage | npower League One |
| 5 | Sat 20 Oct 2012 | 332-0 v Carlisle UnitedColchester United 2-0 Carlisle United | npower League One |
| 6 | Tue 23 Oct 2012 | 332-0 v Leyton OrientLeyton Orient 0-2 Colchester United | npower League One |
| 7 | Sat 27 Oct 2012 | 332-2 v Shrewsbury TownShrewsbury Town 2-2 Colchester United | npower League One |
| 8 | Sat 3 Nov 2012 | 331-3 v Chelmsford CityChelmsford City 3-1 Colchester United | FA Cup with Budweiser First Round |
| 9 | Tue 6 Nov 2012 | 330-2 v Notts CountyColchester United 0-2 Notts County | npower League One |
| 10 | Sat 10 Nov 2012 | 332-3 v Crewe AlexandraCrewe Alexandra 3-2 Colchester United | npower League One |
| 11 | Sat 17 Nov 2012 | 332-0 v BuryColchester United 2-0 Bury | npower League One |
| 12 | Tue 20 Nov 2012 | 331-3 v Coventry CityColchester United 1-3 Coventry City | npower League One |
| 13 | Sat 24 Nov 2012 | 331-5 v Milton Keynes DonsMilton Keynes Dons 5-1 Colchester United | npower League One |
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