| 1 | Sat 6 Aug 2016 | 40-3 v GatesheadGateshead 3-0 Chester | National League |
| 2 | Tue 9 Aug 2016 | 43-0 v Dagenham & RedbridgeChester 3-0 Dagenham & Redbridge | National League |
| 3 | Sat 13 Aug 2016 | 41-3 v Maidstone UnitedChester 1-3 Maidstone United | National League |
| 4 | Sat 27 Aug 2016 | 44-0 v Sutton UnitedChester 4-0 Sutton United | National League |
| 5 | Mon 29 Aug 2016 | 41-3 v WokingWoking 3-1 Chester | National League |
| 6 | Sat 3 Sep 2016 | 41-2 v Forest Green RoversChester 1-2 Forest Green Rovers | National League |
| 7 | Sat 1 Oct 2016 | 45-0 v Dover AthleticChester 5-0 Dover Athletic | National League |
| 8 | Tue 4 Oct 2016 | 41-0 v North Ferriby UnitedNorth Ferriby United 0-1 Chester | National League |
| 9 | Sat 8 Oct 2016 | 41-0 v Torquay UnitedChester 1-0 Torquay United | National League |
| 10 | Sat 22 Oct 2016 | 41-1 v York CityYork City 1-1 Chester | National League |
| 11 | Sat 17 Dec 2016 | 42-0 v Aldershot TownChester 2-0 Aldershot Town | National League |
| 12 | Mon 26 Dec 2016 | 42-3 v Solihull MoorsSolihull Moors 3-2 Chester | National League |
| 13 | Sun 1 Jan 2017 | 40-3 v Solihull MoorsChester 0-3 Solihull Moors | National League |
| 14 | Sat 7 Jan 2017 | 42-1 v Braintree TownBraintree Town 1-2 Chester | National League |
| 15 | Sat 14 Jan 2017 | 40-2 v Forest Green RoversChester 0-2 Forest Green Rovers | FA Trophy Second Round |
| 16 | Sat 21 Jan 2017 | 41-1 v WrexhamChester 1-1 Wrexham | National League |
| 17 | Sat 4 Feb 2017 | 42-3 v Dagenham & RedbridgeDagenham & Redbridge 3-2 Chester | National League |
| 18 | Sat 11 Feb 2017 | 41-2 v GatesheadChester 1-2 Gateshead | National League |
| 19 | Sat 18 Feb 2017 | 42-4 v Maidstone UnitedMaidstone United 4-2 Chester | National League |
| 20 | Sat 25 Feb 2017 | 41-0 v SouthportSouthport 0-1 Chester | National League |
| 21 | Sat 8 Apr 2017 | 40-2 v York CityChester 0-2 York City | National League |
| 22 | Tue 11 Apr 2017 | 40-1 v Lincoln CityLincoln City 1-0 Chester | National League |
| 23 | Mon 17 Apr 2017 | 42-3 v WokingChester 2-3 Woking | National League |
| 24 | Sat 22 Apr 2017 | 42-5 v Sutton UnitedSutton United 5-2 Chester | National League |
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