| 1 | Sat 29 Sep 2012 | 6-2 v Stalybridge CelticStalybridge Celtic 2-6 Chester | Blue Square Bet North |
| 2 | Sat 27 Oct 2012 | 2-1 v HistonChester 2-1 Histon | Blue Square Bet North |
| 3 | Tue 30 Oct 2012 | 3-0 v Vauxhall MotorsVauxhall Motors 0-3 Chester | Blue Square Bet North |
| 4 | Sun 18 Nov 2012 | 1-0 v Gloucester CityGloucester City 0-1 Chester | Blue Square Bet North |
| 5 | Sat 24 Nov 2012 | 4-1 v HistonHiston 1-4 Chester | Blue Square Bet North |
| 6 | Wed 28 Nov 2012 | 2-1 v Corby TownChester 2-1 Corby Town | Blue Square Bet North |
| 7 | Sat 1 Dec 2012 | 4-2 v Worcester CityChester 4-2 Worcester City | Blue Square Bet North |
| 8 | Sat 8 Dec 2012 | 3-2 v Brackley TownBrackley Town 2-3 Chester | Blue Square Bet North |
| 9 | Sat 15 Dec 2012 | 4-1 v Bishop's StortfordChester 4-1 Bishop's Stortford | Blue Square Bet North |
| 10 | Wed 19 Dec 2012 | 2-0 v Harrogate TownChester 2-0 Harrogate Town | Blue Square Bet North |
| 11 | Wed 26 Dec 2012 | 5-0 v DroylsdenChester 5-0 Droylsden | Blue Square Bet North |
| 12 | Sat 29 Dec 2012 | 3-0 v Hinckley UnitedChester 3-0 Hinckley United | Blue Square Bet North |
| 13 | Tue 1 Jan 2013 | 4-3 v DroylsdenDroylsden 3-4 Chester | Blue Square Bet North |
| 14 | Sat 5 Jan 2013 | 0-0 v Bradford Park AvenueBradford Park Avenue 0-0 Chester | Blue Square Bet North |
| 15 | Wed 9 Jan 2013 | 2-0 v Oxford CityChester 2-0 Oxford City | Blue Square Bet North |
| 16 | Sat 12 Jan 2013 | 6-0 v Hinckley UnitedHinckley United 0-6 Chester | Blue Square Bet North |
| 17 | Sat 19 Jan 2013 | 4-1 v Stalybridge CelticChester 4-1 Stalybridge Celtic | Blue Square Bet North |
| 18 | Sat 2 Feb 2013 | 0-0 v Brackley TownChester 0-0 Brackley Town | Blue Square Bet North |
| 19 | Sat 16 Feb 2013 | 2-1 v Corby TownCorby Town 1-2 Chester | Blue Square Bet North |
| 20 | Tue 19 Feb 2013 | 1-1 v WorkingtonWorkington 1-1 Chester | Blue Square Bet North |
| 21 | Sat 23 Feb 2013 | 2-0 v Vauxhall MotorsChester 2-0 Vauxhall Motors | Blue Square Bet North |
| 22 | Wed 27 Feb 2013 | 3-1 v Gainsborough TrinityChester 3-1 Gainsborough Trinity | Blue Square Bet North |
| 23 | Sat 9 Mar 2013 | 3-1 v Harrogate TownHarrogate Town 1-3 Chester | Blue Square Bet North |
| 24 | Sat 30 Mar 2013 | 5-1 v Colwyn BayColwyn Bay 1-5 Chester | Blue Square Bet North |
| 25 | Mon 1 Apr 2013 | 2-0 v AltrinchamChester 2-0 Altrincham | Blue Square Bet North |
| 26 | Thu 4 Apr 2013 | 2-0 v Gainsborough TrinityGainsborough Trinity 0-2 Chester | Blue Square Bet North |
| 27 | Sat 6 Apr 2013 | 1-0 v Boston UnitedChester 1-0 Boston United | Blue Square Bet North |
| 28 | Sat 13 Apr 2013 | 1-2 v GuiseleyGuiseley 2-1 Chester | Blue Square Bet North |
| 29 | Sat 20 Apr 2013 | 0-1 v Solihull MoorsChester 0-1 Solihull Moors | Blue Square Bet North |
| 30 | Thu 25 Apr 2013 | 1-1 v FC Halifax TownFC Halifax Town 1-1 Chester | Blue Square Bet North |
| 31 | Sat 27 Apr 2013 | 1-0 v Worcester CityWorcester City 0-1 Chester | Blue Square Bet North |
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