| 1 | Sat 6 Aug 2016 | 0-0 v North Ferriby UnitedNorth Ferriby United 0-0 Braintree Town | National League |
| 2 | Tue 9 Aug 2016 | 1-1 v EastleighBraintree Town 1-1 Eastleigh | National League |
| 3 | Sat 13 Aug 2016 | 51-3 v Macclesfield TownBraintree Town 1-3 Macclesfield Town | National League |
| 4 | Tue 16 Aug 2016 | 51-2 v Maidstone UnitedMaidstone United 2-1 Braintree Town | National League |
| 5 | Sat 20 Aug 2016 | 52-0 v Aldershot TownBraintree Town 2-0 Aldershot Town | National League |
| 6 | Mon 29 Aug 2016 | 51-3 v Torquay UnitedBraintree Town 1-3 Torquay United | National League |
| 7 | Tue 13 Sep 2016 | 52-1 v Sutton UnitedSutton United 1-2 Braintree Town | National League |
| 8 | Tue 4 Oct 2016 | 51-2 v Boreham WoodBraintree Town 1-2 Boreham Wood | National League |
| 9 | Sat 8 Oct 2016 | 51-1 v York CityBraintree Town 1-1 York City | National League |
| 10 | Sat 22 Oct 2016 | 51-6 v Dover AthleticDover Athletic 6-1 Braintree Town | National League |
| 11 | Tue 25 Oct 2016 | 53-2 v WokingWoking 2-3 Braintree Town | National League |
| 12 | Sat 29 Oct 2016 | 50-1 v Solihull MoorsBraintree Town 0-1 Solihull Moors | National League |
| 13 | Sun 4 Dec 2016 | 52-5 v MillwallMillwall 5-2 Braintree Town | Emirates FA Cup Second Round |
| 14 | Tue 20 Dec 2016 | 51-0 v Boreham WoodBoreham Wood 0-1 Braintree Town | National League |
| 15 | Mon 26 Dec 2016 | 53-2 v Dagenham & RedbridgeBraintree Town 3-2 Dagenham & Redbridge | National League |
| 16 | Mon 2 Jan 2017 | 50-3 v Dagenham & RedbridgeDagenham & Redbridge 3-0 Braintree Town | National League |
| 17 | Sat 7 Jan 2017 | 51-2 v ChesterBraintree Town 1-2 Chester | National League |
| 18 | Tue 10 Jan 2017 | 51-0 v Sutton UnitedBraintree Town 1-0 Sutton United | National League |
| 19 | Tue 14 Feb 2017 | 52-0 v EastleighEastleigh 0-2 Braintree Town | National League |
| 20 | Sat 25 Feb 2017 | 50-0 v Maidstone UnitedBraintree Town 0-0 Maidstone United | National League |
| 21 | Tue 28 Feb 2017 | 55-0 v BromleyBromley 0-5 Braintree Town | National League |
| 22 | Sat 11 Mar 2017 | 53-3 v Solihull MoorsSolihull Moors 3-3 Braintree Town | National League |
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