| 1 | Wed 26 Dec 2012 | 1-1 v Corby TownBoston United 1-1 Corby Town | Blue Square Bet North |
| 2 | Sat 29 Dec 2012 | 3-1 v Oxford CityBoston United 3-1 Oxford City | Blue Square Bet North |
| 3 | Tue 1 Jan 2013 | 1-2 v Corby TownCorby Town 2-1 Boston United | Blue Square Bet North |
| 4 | Sat 5 Jan 2013 | 1-1 v WorkingtonWorkington 1-1 Boston United | Blue Square Bet North |
| 5 | Tue 8 Jan 2013 | 1-2 v Harrogate TownBoston United 1-2 Harrogate Town | Blue Square Bet North |
| 6 | Sat 12 Jan 2013 | 1-0 v Colwyn BayBoston United 1-0 Colwyn Bay | Blue Square Bet North |
| 7 | Tue 29 Jan 2013 | 1-7 v AltrinchamAltrincham 7-1 Boston United | Blue Square Bet North |
| 8 | Sat 2 Feb 2013 | 2-2 v Gainsborough TrinityGainsborough Trinity 2-2 Boston United | Blue Square Bet North |
| 9 | Sat 9 Feb 2013 | 1-2 v GuiseleyGuiseley 2-1 Boston United | Blue Square Bet North |
| 10 | Sat 16 Feb 2013 | 2-2 v Stalybridge CelticBoston United 2-2 Stalybridge Celtic | Blue Square Bet North |
| 11 | Tue 26 Feb 2013 | 2-4 v Harrogate TownHarrogate Town 4-2 Boston United | Blue Square Bet North |
| 12 | Sat 2 Mar 2013 | 0-1 v Vauxhall MotorsBoston United 0-1 Vauxhall Motors | Blue Square Bet North |
| 13 | Sat 9 Mar 2013 | 2-0 v Brackley TownBrackley Town 0-2 Boston United | Blue Square Bet North |
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