| 1 | Sat 6 Aug 2016 | 44-0 v PeterheadAlloa Athletic 4-0 Peterhead | Ladbrokes League One |
| 2 | Tue 9 Aug 2016 | 1-0 v Inverness Caledonian ThistleAlloa Athletic 1-0 Inverness Caledonian Thistle | Betfred Cup Second Round |
| 3 | Sat 13 Aug 2016 | 45-2 v StranraerStranraer 2-5 Alloa Athletic | Ladbrokes League One |
| 4 | Sat 20 Aug 2016 | 2-1 v East FifeAlloa Athletic 2-1 East Fife | Ladbrokes League One |
| 5 | Sat 27 Aug 2016 | 44-0 v Albion RoversAlbion Rovers 0-4 Alloa Athletic | Ladbrokes League One |
| 6 | Sat 10 Sep 2016 | 41-3 v LivingstonAlloa Athletic 1-3 Livingston | Ladbrokes League One |
| 7 | Sat 17 Sep 2016 | 42-1 v Queens ParkQueens Park 1-2 Alloa Athletic | Ladbrokes League One |
| 8 | Wed 21 Sep 2016 | 0-2 v CelticCeltic 2-0 Alloa Athletic | Betfred Cup Quarter Final |
| 9 | Sat 24 Sep 2016 | 2-2 v StenhousemuirStenhousemuir 2-2 Alloa Athletic | Ladbrokes League One |
| 10 | Sat 15 Oct 2016 | 1-0 v Brechin CityBrechin City 0-1 Alloa Athletic | Ladbrokes League One |
| 11 | Sat 22 Oct 2016 | 1-3 v LivingstonLivingston 3-1 Alloa Athletic | Ladbrokes League One |
| 12 | Sat 29 Oct 2016 | 0-0 v Albion RoversAlloa Athletic 0-0 Albion Rovers | Ladbrokes League One |
| 13 | Sat 5 Nov 2016 | 4-1 v StenhousemuirAlloa Athletic 4-1 Stenhousemuir | Ladbrokes League One |
| 14 | Sat 12 Nov 2016 | 0-2 v Queen of the SouthQueen of the South 2-0 Alloa Athletic | IRN-BRU Cup Quarter Final |
| 15 | Tue 15 Nov 2016 | 2-2 v East FifeEast Fife 2-2 Alloa Athletic | Ladbrokes League One |
| 16 | Sat 19 Nov 2016 | 1-2 v AirdrieoniansAirdrieonians 2-1 Alloa Athletic | Ladbrokes League One |
| 17 | Sat 26 Nov 2016 | 1-0 v PeterheadPeterhead 0-1 Alloa Athletic | William Hill Scottish Cup Second Round |
| 18 | Sat 10 Dec 2016 | 1-1 v PeterheadPeterhead 1-1 Alloa Athletic | Ladbrokes League One |
| 19 | Tue 13 Dec 2016 | 2-2 v StranraerAlloa Athletic 2-2 Stranraer | Ladbrokes League One |
| 20 | Sat 17 Dec 2016 | 1-1 v Queens ParkAlloa Athletic 1-1 Queens Park | Ladbrokes League One |
| 21 | Sat 24 Dec 2016 | 1-2 v Brechin CityAlloa Athletic 1-2 Brechin City | Ladbrokes League One |
| 22 | Sat 31 Dec 2016 | 4-2 v StenhousemuirStenhousemuir 2-4 Alloa Athletic | Ladbrokes League One |
| 23 | Sat 14 Jan 2017 | 0-1 v PeterheadAlloa Athletic 0-1 Peterhead | Ladbrokes League One |
| 24 | Sat 21 Jan 2017 | 2-3 v Dunfermline AthleticAlloa Athletic 2-3 Dunfermline Athletic | William Hill Scottish Cup Fourth Round |
| 25 | Sat 28 Jan 2017 | 1-1 v Albion RoversAlbion Rovers 1-1 Alloa Athletic | Ladbrokes League One |
| 26 | Sat 4 Feb 2017 | 2-2 v LivingstonAlloa Athletic 2-2 Livingston | Ladbrokes League One |
| 27 | Sat 18 Feb 2017 | 2-0 v Queens ParkQueens Park 0-2 Alloa Athletic | Ladbrokes League One |
| 28 | Sat 25 Feb 2017 | 2-1 v AirdrieoniansAlloa Athletic 2-1 Airdrieonians | Ladbrokes League One |
| 29 | Tue 28 Feb 2017 | 3-0 v East FifeAlloa Athletic 3-0 East Fife | Ladbrokes League One |
| 30 | Sat 11 Mar 2017 | 2-1 v StenhousemuirAlloa Athletic 2-1 Stenhousemuir | Ladbrokes League One |
| 31 | Sat 18 Mar 2017 | 0-0 v East FifeEast Fife 0-0 Alloa Athletic | Ladbrokes League One |
| 32 | Tue 21 Mar 2017 | 2-1 v Brechin CityBrechin City 1-2 Alloa Athletic | Ladbrokes League One |
| 33 | Sat 25 Mar 2017 | 2-2 v Queens ParkAlloa Athletic 2-2 Queens Park | Ladbrokes League One |
| 34 | Sat 1 Apr 2017 | 1-1 v Albion RoversAlloa Athletic 1-1 Albion Rovers | Ladbrokes League One |
| 35 | Sat 8 Apr 2017 | 1-2 v LivingstonLivingston 2-1 Alloa Athletic | Ladbrokes League One |
| 36 | Sat 15 Apr 2017 | 6-1 v Brechin CityAlloa Athletic 6-1 Brechin City | Ladbrokes League One |
| 37 | Sat 22 Apr 2017 | 1-0 v AirdrieoniansAirdrieonians 0-1 Alloa Athletic | Ladbrokes League One |
| 38 | Sat 29 Apr 2017 | 1-0 v StranraerAlloa Athletic 1-0 Stranraer | Ladbrokes League One |
| 39 | Wed 10 May 2017 | 0-1 v AirdrieoniansAirdrieonians 1-0 Alloa Athletic | Ladbrokes League One Play-off |
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