| 1 | Sat 6 Aug 2016 | 41-3 v WalsallWalsall 3-1 AFC Wimbledon | Sky Bet League One |
| 2 | Sat 13 Aug 2016 | 41-2 v Bolton WanderersAFC Wimbledon 1-2 Bolton Wanderers | Sky Bet League One |
| 3 | Tue 16 Aug 2016 | 41-2 v Scunthorpe UnitedAFC Wimbledon 1-2 Scunthorpe United | Sky Bet League One |
| 4 | Sat 20 Aug 2016 | 40-0 v Northampton TownNorthampton Town 0-0 AFC Wimbledon | Sky Bet League One |
| 5 | Sat 27 Aug 2016 | 41-1 v RochdaleRochdale 1-1 AFC Wimbledon | Sky Bet League One |
| 6 | Sat 3 Sep 2016 | 42-1 v ChesterfieldAFC Wimbledon 2-1 Chesterfield | Sky Bet League One |
| 7 | Sat 17 Sep 2016 | 42-1 v Charlton AthleticCharlton Athletic 1-2 AFC Wimbledon | Sky Bet League One |
| 8 | Sat 24 Sep 2016 | 41-1 v Shrewsbury TownAFC Wimbledon 1-1 Shrewsbury Town | Sky Bet League One |
| 9 | Wed 28 Sep 2016 | 42-2 v Coventry CityCoventry City 2-2 AFC Wimbledon | Sky Bet League One |
| 10 | Sat 1 Oct 2016 | 42-0 v GillinghamAFC Wimbledon 2-0 Gillingham | Sky Bet League One |
| 11 | Sun 9 Oct 2016 | 43-1 v Oxford UnitedOxford United 1-3 AFC Wimbledon | Sky Bet League One |
| 12 | Sat 15 Oct 2016 | 40-0 v Swindon TownAFC Wimbledon 0-0 Swindon Town | Sky Bet League One |
| 13 | Tue 18 Oct 2016 | 42-1 v BuryBury 1-2 AFC Wimbledon | Sky Bet League One |
| 14 | Sat 22 Oct 2016 | 41-0 v Peterborough UnitedPeterborough United 0-1 AFC Wimbledon | Sky Bet League One |
| 15 | Sat 29 Oct 2016 | 42-3 v Bradford CityAFC Wimbledon 2-3 Bradford City | Sky Bet League One |
| 16 | Sat 12 Nov 2016 | 40-0 v Oldham AthleticOldham Athletic 0-0 AFC Wimbledon | Sky Bet League One |
| 17 | Tue 22 Nov 2016 | 40-0 v MillwallMillwall 0-0 AFC Wimbledon | Sky Bet League One |
| 18 | Sat 26 Nov 2016 | 42-2 v Fleetwood TownAFC Wimbledon 2-2 Fleetwood Town | Sky Bet League One |
| 19 | Sun 4 Dec 2016 | 44-3 v Curzon AshtonCurzon Ashton 3-4 AFC Wimbledon | Emirates FA Cup Second Round |
| 20 | Sat 10 Dec 2016 | 40-1 v Milton Keynes DonsMilton Keynes Dons 1-0 AFC Wimbledon | Sky Bet League One |
| 21 | Sat 17 Dec 2016 | 44-0 v Port ValeAFC Wimbledon 4-0 Port Vale | Sky Bet League One |
| 22 | Mon 26 Dec 2016 | 40-3 v Southend UnitedSouthend United 3-0 AFC Wimbledon | Sky Bet League One |
| 23 | Sat 31 Dec 2016 | 40-2 v Bristol RoversBristol Rovers 2-0 AFC Wimbledon | Sky Bet League One |
| 24 | Mon 2 Jan 2017 | 42-2 v MillwallAFC Wimbledon 2-2 Millwall | Sky Bet League One |
| 25 | Sat 7 Jan 2017 | 40-0 v Sutton UnitedSutton United 0-0 AFC Wimbledon | Emirates FA Cup Third Round |
| 26 | Sat 14 Jan 2017 | 42-1 v Oxford UnitedAFC Wimbledon 2-1 Oxford United | Sky Bet League One |
| 27 | Tue 17 Jan 2017 | 41-3 v Sutton UnitedAFC Wimbledon 1-3 Sutton United | Emirates FA Cup Third Round Replay |
| 28 | Sat 21 Jan 2017 | 40-0 v ChesterfieldChesterfield 0-0 AFC Wimbledon | Sky Bet League One |
| 29 | Sat 4 Feb 2017 | 40-4 v Sheffield UnitedSheffield United 4-0 AFC Wimbledon | Sky Bet League One |
| 30 | Tue 14 Feb 2017 | 41-1 v Coventry CityAFC Wimbledon 1-1 Coventry City | Sky Bet League One |
| 31 | Sat 25 Feb 2017 | 41-0 v WalsallAFC Wimbledon 1-0 Walsall | Sky Bet League One |
| 32 | Tue 28 Feb 2017 | 42-1 v Scunthorpe UnitedScunthorpe United 1-2 AFC Wimbledon | Sky Bet League One |
| 33 | Sat 4 Mar 2017 | 41-1 v Bolton WanderersBolton Wanderers 1-1 AFC Wimbledon | Sky Bet League One |
| 34 | Sat 11 Mar 2017 | 40-1 v Northampton TownAFC Wimbledon 0-1 Northampton Town | Sky Bet League One |
| 35 | Tue 14 Mar 2017 | 42-0 v Milton Keynes DonsAFC Wimbledon 2-0 Milton Keynes Dons | Sky Bet League One |
| 36 | Sat 18 Mar 2017 | 40-0 v Fleetwood TownFleetwood Town 0-0 AFC Wimbledon | Sky Bet League One |
| 37 | Sat 8 Apr 2017 | 40-1 v Bristol RoversAFC Wimbledon 0-1 Bristol Rovers | Sky Bet League One |
| 38 | Fri 14 Apr 2017 | 70-0 v Swindon TownSwindon Town 0-0 AFC Wimbledon | Sky Bet League One |
| 39 | Mon 17 Apr 2017 | 40-0 v Peterborough UnitedAFC Wimbledon 0-0 Peterborough United | Sky Bet League One |
| 40 | Sat 22 Apr 2017 | 40-3 v Bradford CityBradford City 3-0 AFC Wimbledon | Sky Bet League One |
| 41 | Sun 30 Apr 2017 | 40-0 v Oldham AthleticAFC Wimbledon 0-0 Oldham Athletic | Sky Bet League One |
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